DisGeNET - a database of gene-disease associations

List of shared variants

Malignant neoplasm of stomach, C0024623

Disease: Malignant Neoplasms

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1131691014	TP53	0.439	0.800	17	7676154	frameshift variant	-/C	ins			214
rs11655237	LINC00511 ; LINC00673	0.724	0.280	17	72404025	non coding transcript exon variant	C/T	snv		0.16	17
rs2297518	NOS2	0.658	0.480	17	27769571	missense variant	G/A	snv	0.18	0.17	30
rs2302254	NME1-NME2 ; NME1	0.752	0.240	17	51153539	5 prime UTR variant	C/T	snv		0.22	15
rs3809865	THCAT158 ; ITGB3	0.790	0.240	17	47311220	3 prime UTR variant	T/A;G	snv			11
rs744166	STAT3	0.689	0.560	17	42362183	intron variant	A/G	snv		0.48	22
rs7813	GEMIN4	0.689	0.360	17	744946	missense variant	G/A;C	snv	0.63		22
rs799917	BRCA1	0.708	0.320	17	43092919	missense variant	G/A;C;T	snv	0.40; 1.6E-05		18
rs878854066	TP53	0.439	0.800	17	7676153	missense variant	GG/AC	mnv			213
rs1042028	SULT1A1	0.658	0.440	16	28606193	missense variant	C/T	snv	0.22	0.30	30
rs16260	CDH1	0.716	0.440	16	68737131	upstream gene variant	C/A	snv		0.24	19
rs1799801	ERCC4	0.807	0.360	16	13948101	synonymous variant	T/C	snv	0.27	0.25	9
rs1800566	NQO1	0.576	0.680	16	69711242	missense variant	G/A	snv	0.25	0.21	59
rs2066844	NOD2	0.587	0.520	16	50712015	missense variant	C/T	snv	2.6E-02	2.9E-02	54
rs2066845	NOD2	0.611	0.600	16	50722629	missense variant	G/C;T	snv	1.1E-02; 2.2E-04		46
rs2276466	ERCC4	0.732	0.320	16	13949318	3 prime UTR variant	C/A;G	snv			15
rs744154	ERCC4	0.763	0.280	16	13921224	intron variant	G/C	snv		0.23	11
rs9282861	SULT1A1	0.658	0.440	16	28606193	missense variant	C/T	snv			31
rs1048943	CYP1A1	0.533	0.720	15	74720644	missense variant	T/A;C;G	snv	0.11	5.9E-02	88
rs1131445	IL16 ; STARD5	0.724	0.440	15	81309441	3 prime UTR variant	T/A;C	snv			16
rs11556218	IL16	0.653	0.600	15	81305928	missense variant	T/G	snv	9.6E-02	0.12	27
rs3743073	CHRNA3	0.807	0.120	15	78617197	intron variant	G/T	snv		0.61	11
rs4072111	IL16	0.716	0.400	15	81285798	missense variant	C/T	snv	0.17	0.11	16
rs4778889	IL16	0.683	0.480	15	81296654	intron variant	T/C	snv		0.24	24
rs667282	CHRNA5	0.790	0.120	15	78571130	intron variant	T/C	snv		0.28	13